> Utilities1,2
Graphic Converter
(PC/Mac classic/OS9)
Stuffit Expander
(PC/Mac)
WinZip
(PC/Mac)
BioPerl
Bioperl is a tool kit of perl modules useful in building bioinformatics solutions in perl. (hc-alpha, cluster)
MPI
MPI is a standardized library for message-passing, allowing multiple machine to work as a single machine for solving parallel problems. This allows for the use of low cost machines to build large clusters. (hc-alpha, cluster)
MPIBlast
MPIBlast is a freely available open source parallelization of NCBI BLAST. mpiBLAST segments the BLAST database and distributes it across cluster nodes, permitting BLAST queries to be processed on many nodes simultaneously. (hc-alpha, cluster)
GNU emacs
Emacs is a multi-purpose text editor with syntax highlighting for many programming languages and markup specifications. It can also be used with extensions to send email or browse the web. (cluster)
LSF
A policy driven batch application that allows workload processing for clusters. (cluster)
PVM
PVM (Parallel Virtual Machine) is a software package that permits a heterogeneous collection of Unix and/or Windows computers hooked together by a network to be used as a single large parallel computer. Thus large computational problems can be solved more cost effectively by using the aggregate power and memory of many computers. (cluster)
HCWebFetch
This database system contains extensive information on all Hartwell Center reagent and service transactions. St. Jude faculty and staff, with appropriate username/password access, may use this web-based query system to view these records and download any data files associated with a particular chemistry. (web)
MySQL
(cluster)
1Please contact your Local Support Provider (LSPs) to have any of these applications installed on your system. Click on the link below for a complete listing of the LSPs and their contact information: http://www.hartwellcenter.org/bio_rescom/clientSer/contactlsp.php
2To establish an account on a computer system, please fill out the Account Request Form and return to Bioinformatics (room D1010, first floor DTRT).